A Foundation Model for Cell Segmentation

bioRxiv, 2023

Uriah Israel*, Markus Marks*, Rohit Dilip*, Qilin Li, Morgan Schwartz, Elora Pradhan, Edward Pao, Shenyi Li, Alexander Pearson-Goulart, Pietro Perona, Georgia Gkioxari, Ross Barnowski, Yisong Yue, David Van Valen.

Caliban: Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning

bioRxiv, 2023

Morgan Schwartz, Erick Moen, Geneva Miller, Tom Dougherty, Enrico Borba, Rachel Ding, William Graf, Edward Pao, David Van Valen.

A spatially resolved timeline of the human maternal–fetal interface

Nature, 2023

Shirley Greenbaum, Inna Averbukh, Erin Soon, Gabrielle Rizzuto, Alex Barnanski, Noah Greenwald, Adam Kagel, Marc Bosse, Eleni Jaswa, Zumana Kahir, Shirley Kwok, Shiri Warshawsky, Hadeesha Piyadasa, Mako Goldston, Angie Spence, Geneva Miller, Morgan Schwartz, Will Graf, David Van Valen, Virginia Winn, Travis Hollman, Leeat Keren, Matt van de Rijn, Michael Angelo.

Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

Nature Biotechnology, 2021

Noah F. Greenwald, Geneva Miller, Erick Moen, Alex Kong, Adam Kagel, Christine Camacho Fullaway, Brianna J. McIntosh, Ke Leow, Morgan Schwartz, Thomas Dougherty, Cole Pavelchek, Sunny Cui, Isabella Camplisson, Omer Bar-Tal, Jaiveer Singh, Mara Fong, Gautam Chaudhry, Zion Abraham, Jackson Moseley, Shiri Warshawsky, Erin Soon, Shirley Greenbaum, Tyler Risom, Travis Hollmann, Leeat Keren, Will Graf, Michael Angelo, David Van Valen.

DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes

Nature Methods, 2021

Dylan Bannon, Erick Moen, Morgan Schwartz, Enrico Borba, Takamasa Kudo, Noah Greenwald, Vibha Vijayakumar, Brian Chang, Edward Pao, Erik Osterman, William Graf, David Van Valen.

Characterizing the diverse cells that associate with the developing commissures of the zebrafish forebrain

Developmental Neurobiology, 2020

Jake Schnabl, Mackenzie Litz, Caitlin Schneider, Nadia PenkoffLidbeck, Sarah Bashiruddin, Morgan Schwartz, Kristin Alligood, Stephen Devoto, Michael Barresi.

ΔSCOPE: A new method to quantify 3D biological structures and identify differences in zebrafish forebrain development

Develomental Biology, 2020

Morgan Schwartz*, Jake Schnabl*, Mackenzie Litz, Benjamin Baumer, Michael Barresi.

Neurofibrillary Tangle Predominant Dementia: Clinical and Pathological Description in a Case Series

Journal of Alzheimer's Disease & Parkinsonism, 2016

Morgan Schwartz, Thomas G Beach, Andrew Tsai, Michael Malek-Ahmadi, Sandra Jacobson, Lucia I Sue, Kathryn Davis, Marwan N Sabbagh, Geidy Serrano.


* Equal authorship